Fitness data for PP_4348 in Pseudomonas putida KT2440

putative Cystathionine beta-lyase
SEED: Cystathionine beta-lyase (EC 4.4.1.8)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.8 -3.1 compare
pH Growth at pH6 and (C) D-Glucose -1.2 -1.7 compare
pH Growth at pH7 and (C) Trisodium citrate -1.2 -2.1 compare
nitrogen source NAG (N); with MOPS -1.1 -1.4 compare
pH Growth at pH7 and (C) D-Glucose -1.1 -1.3 compare
carbon source D-Glucose (C) -1.1 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.0 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.0 -1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -1.0 -1.6 compare
carbon source 1,3-Butandiol (C) -1.0 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -2.0 compare
pH Valerolactone (C) pH 6.5 -0.9 -1.9 compare
pH Growth at pH9 and (C) Trisodium citrate +0.8 +2.1 compare
pH Growth at pH8 and (C) Trisodium citrate +0.8 +3.5 compare
nitrogen source Propandiamine (N) +0.9 +3.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +1.0 +2.0 compare
phage P. put South MOI 10 +1.0 +3.6 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +1.3 +2.0 compare