Fitness data for PP_4311 in Pseudomonas putida KT2440

putative D-amino acid dehydrogenase 2 small subunit
SEED: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
KEGG: D-amino-acid dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
pH pH 5 -1.0 -3.3 compare
pH Growth at pH8 and (C) D-Glucose -0.8 -2.2 compare
pH Growth at pH7 and (C) D-Glucose -0.8 -1.3 compare
carbon source carbon source D-Glucose 55.5 mM -0.8 -2.4 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.7 -1.9 compare
carbon source ferulate (C); with MOPS -0.7 -1.7 compare
carbon source D-Fructose (C) -0.7 -3.0 compare
nitrogen source nitrogen source nitrite 0.5mM -0.7 -1.6 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.6 -2.1 compare
phage P. put PUT 10 MOI 0.1 -0.6 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.6 compare
carbon source 2-Methylbutanoic (C) -0.6 -2.1 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.6 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.9 compare
temperature shift Temperature shift 30_to_25 -0.6 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -2.5 compare
phage P. putida Missley MOI 0.1 +0.6 +1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.8 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.6 +2.8 compare