Fitness data for PP_4294 in Pseudomonas putida KT2440

conserved inner membrane protein
SEED: Membrane protein, putative
KEGG: hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -3.4 compare
phage P. putida Sci small MOI 0.1 -0.7 -1.8 compare
nitrogen source nitrate (N) -0.7 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -3.4 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.6 -3.2 compare
carbon source D-Lysine 10 mM (C) -0.6 -2.9 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.6 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -2.3 compare
stress Geraniol 1 vol% -0.6 -2.6 compare
nitrogen source nitrogen source nitrite 0.5mM -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -1.9 compare
nitrogen source nitrogen source nitrate 20mM -0.5 -2.4 compare
no stress control Growth with no stress -0.5 -1.7 compare
carbon source Vanillic Acid (C) -0.5 -2.5 compare
nitrogen source Hippuric (N) -0.5 -2.7 compare
pH Growth at pH7 and (C) D-Glucose +0.5 +1.9 compare
phage P. putida Missley MOI 0.1 +0.6 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 +2.0 compare
carbon source L-Leucine (C) +0.6 +2.3 compare