Fitness data for PP_4262 in Pseudomonas putida KT2440

Cytochrome oxidase maturation protein, cbb3-type
SEED: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.4)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -4.3 -2.4 compare
pH Growth at pH7 and (C) D-Glucose -4.2 -2.0 compare
pH Growth at pH6 and (C) D-Glucose -4.0 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.6 -3.0 compare
carbon source ferulate (C); with MOPS -3.5 -1.9 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -3.4 -3.1 compare
stress R2A with Fusaric 240 ug/mL -3.3 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.9 -2.4 compare
carbon source ferulate (C); with MOPS -2.9 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.8 -2.6 compare
stress Geraniol 1 vol% -2.8 -4.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.8 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.7 -2.6 compare
stress R2A with Fusaric 480 ug/mL -2.6 -3.5 compare
temperature shift Temperature shift 30_to_21; with MOPS -2.6 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.5 -1.7 compare
pH Growth at pH9 and (C) Trisodium citrate -2.5 -2.6 compare
carbon source D-Glucose (C) -2.4 -2.5 compare
microaerobic m9 microaerobic M9 -2.4 -3.6 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +3.1 +1.9 compare