Fitness data for PP_4242 in Pseudomonas putida KT2440

conserved protein of unknown function with Rhs repeat-associated core domain
SEED: YD repeat protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
temperature shift Temperature shift 30_to_25; with MOPS -1.0 -3.2 compare
pH Growth at pH8 and (C) Trisodium citrate -0.8 -3.3 compare
temperature shift Temperature shift 30_to_21 -0.7 -3.9 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -1.8 compare
stress Growth with Chloride 500 mM; with MOPS -0.6 -2.3 compare
carbon source carbon source Bisabolol 45 mM -0.6 -2.4 compare
pH pH 6 -0.6 -2.1 compare
phage P. putida Missley MOI 0.1 -0.6 -1.4 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.6 -2.3 compare
carbon source carbon source Bisabolene 48.9 mM -0.6 -1.9 compare
nitrogen source nitrate (N) -0.5 -1.7 compare
pH Valerolactone (C) pH 6.5 -0.5 -2.2 compare
supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x -0.5 -2.8 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -1.5 compare
pH Growth at pH8 and (C) D-Glucose -0.5 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +1.9 compare
nitrogen source nitrogen source nitrite 1mM +0.6 +2.1 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.6 +2.7 compare