Fitness data for PP_4168 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Lipase (EC 3.1.1.3)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -1.8 compare
carbon source 4-Aminobutyric 10 mM (C) -1.2 -1.4 compare
nitrogen source Urea (N); with MOPS -1.1 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.0 -2.8 compare
carbon source Tween 20 (C) -1.0 -1.8 compare
temperature shift Temperature shift 30_to_25 -1.0 -2.2 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.9 -2.0 compare
pH Growth at pH9 and (C) Trisodium citrate -0.9 -2.5 compare
phage P. putida PUT 7 MOI 1 -0.9 -1.5 compare
carbon source ferulate (C); with MOPS -0.9 -1.4 compare
carbon source Nonanoic (C) -0.8 -2.7 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.8 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.0 compare
stress Growth with Chloride 200 mM -0.8 -1.5 compare
carbon source 5-Aminovaleric 10 mM (C) -0.8 -2.6 compare
carbon source Rhamnogalacturonan - from potato (C) -0.8 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +1.9 compare
nitrogen source nitrate (N) +0.9 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +2.2 compare
nitrogen source D-2-Aminobutyric (N) +1.3 +2.7 compare