Fitness data for PP_4157 in Pseudomonas putida KT2440

two-component system DNA-binding response activator KdpE
SEED: sensor histidine kinase
KEGG: two-component system, OmpR family, KDP operon response regulator KdpE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.6 -1.8 compare
carbon source ferulate (C); with MOPS -0.6 -2.1 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -1.9 compare
nitrogen source Propandiamine (N) -0.5 -1.7 compare
carbon source D-Glucose (C); with MOPS -0.5 -1.7 compare
carbon source Oleic (C) -0.5 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.5 -1.3 compare
nitrogen source Hippuric (N) +0.4 +2.4 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant +0.5 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.4 compare
nitrogen source Urea (N) +0.5 +1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.5 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.4 compare
carbon source ferulate (C); with MOPS +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.3 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.8 +3.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.6 compare