Fitness data for PP_4146 in Pseudomonas putida KT2440

Peptide ABC transporter, periplamic peptide-binding protein
SEED: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
KEGG: microcin C transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
nitrogen source Ammonium chloride and TNT (N) -0.6 -4.6 compare
nitrogen source Ammonium chloride and TNT (N) -0.5 -3.8 compare
nitrogen source TNT (N) -0.4 -3.0 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.4 -2.6 compare
carbon source 1-Pentanol (C) -0.4 -3.3 compare
nitrogen source Ammonium chloride and TNT (N) -0.4 -2.9 compare
nitrogen source Ammonium chloride and TNT (N) -0.4 -2.8 compare
temperature shift Temperature shift 30_to_25 -0.4 -1.9 compare
carbon source DL-2-Aminoadipic 10 mM (C) -0.3 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.4 compare
carbon source D-Glucose (C) -0.3 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 -2.2 compare
pH Growth at pH7 and (C) D-Glucose -0.3 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -1.7 compare
phage P. putida PUT 7 MOI 1 -0.3 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 -1.7 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.3 -2.3 compare
carbon source Delta-Nonalactone (C) +0.3 +2.5 compare
carbon source 2,3-Butanediol (C) +0.3 +2.5 compare
carbon source Decanoic (C) +0.9 +7.9 compare