Fitness data for PP_4136 in Pseudomonas putida KT2440

Transcriptional regulator, LuxR family
SEED: DNA-binding domain of LuxR-like proteins

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.2)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.3 -1.1 compare
carbon source Tween 20 (C) -4.0 -1.2 compare
nitrogen source nitrogen source nitrite 0.5mM -3.6 -1.3 compare
temperature Growth at 25C -3.3 -1.0 compare
pH Growth at pH6 and (C) D-Glucose -3.2 -0.8 compare
nitrogen source Ammonium chloride (N) -3.1 -1.0 compare
nitrogen source NAG (N); with MOPS -3.1 -0.8 compare
nitrogen source Urea (N) -3.0 -1.1 compare
pH Growth at pH6 and (C) Trisodium citrate -2.9 -1.2 compare
temperature shift Temperature shift 30_to_25; with MOPS -2.9 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.6 -1.1 compare
phage P. putida Sci small MOI 0.1 -2.6 -0.8 compare
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -2.6 -2.4 compare
stress R2A with Fusaric 480 ug/mL -2.3 -1.9 compare
nitrogen source Propandiamine (N) -2.3 -0.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.2 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +2.2 +2.8 compare
carbon source D-Glucose (C); with MOPS +2.5 +3.3 compare
nitrogen source D-2-Aminobutyric (N) +2.8 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +2.9 +2.0 compare