Fitness data for PP_4079 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Type VI secretion lipoprotein/VasD
KEGG: type VI secretion system protein VasD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -1.0 -2.8 compare
carbon source Ethyl decanoate and D-Glucose (C)s -0.6 -2.8 compare
temperature shift Temperature shift 30_to_10; with MOPS -0.6 -2.7 compare
carbon source Valerolactone (C) -0.6 -2.3 compare
carbon source 3-Hydroxydecanoic (C) -0.6 -2.4 compare
nitrogen source Propandiamine (N) -0.6 -1.6 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.6 compare
temperature Growth at 34C -0.5 -2.3 compare
nitrogen source nitrate (N) -0.5 -2.0 compare
temperature Growth at 30C; with MOPS -0.5 -2.3 compare
carbon source D-Glucose (C); with MOPS -0.5 -1.7 compare
carbon source D-Glucuronic gamma lactone (C) -0.5 -3.0 compare
carbon source Myristic (C) -0.5 -1.1 compare
nitrogen source 2,6-diaminopimelic (N) -0.5 -1.3 compare
nitrogen source NAG (N); with MOPS -0.5 -0.9 compare
supernatant LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter -0.4 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +2.1 compare
pH Valerolactone (C) pH 6.5 +0.5 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.2 compare