Fitness data for PP_4049 in Pseudomonas putida KT2440

type 6 secretion system protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.3 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.8 compare
nitrogen source D-2-Aminobutyric (N) -0.3 -1.7 compare
phage P. putida South MOI 10 -0.3 -2.0 compare
temperature Growth at 25C -0.3 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 -1.6 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.3 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 -1.3 compare
nitrogen source no extra (N); with MOPS -0.3 -1.8 compare
carbon source ferulate (C); with MOPS -0.3 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.4 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.3 +1.7 compare
pH LB 0.1x with 55.5 mM D-Glucose; pH 4.6 +0.3 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +1.8 compare
carbon source Valeric (C) +0.4 +2.0 compare
nitrogen source NAG (N); with MOPS +0.4 +1.9 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.4 +2.3 compare
nitrogen source NAG (N); with MOPS +0.4 +2.2 compare