Fitness data for PP_4046 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source 2,6-diaminopimelic (N) -0.7 -2.7 compare
carbon source L-Leucine (C) -0.6 -2.7 compare
nitrogen source Urea (N) -0.5 -2.0 compare
carbon source Crotonic (C) -0.5 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.6 compare
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.5 -2.5 compare
temperature shift Temperature shift 10_to_30 -0.5 -2.6 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.5 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.6 compare
carbon source ferulate (C); with MOPS -0.5 -1.6 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.9 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.0 compare
carbon source D-Glucose (C); with MOPS -0.4 -1.5 compare
carbon source Acetate Carbon Source (5mM) -0.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.7 compare
temperature Growth at 34C +0.4 +2.5 compare
carbon source ferulate (C); with MOPS +0.4 +1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +2.6 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.6 +4.1 compare