Fitness data for PP_4039 in Pseudomonas putida KT2440

transcriptional regulator, TetR family
SEED: Transcriptional regulator RutR of pyrimidine catabolism (TetR family)
KEGG: TetR/AcrR family transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -2.1 compare
phage P. putida South MOI 10 -0.5 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.1 compare
no phage control No phage control -0.4 -2.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.5 compare
pH pH 5 +0.4 +1.4 compare
carbon source 1,3-Butandiol (C) +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.8 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.4 +2.2 compare
stress Growth with Chloride 200 mM; with MOPS +0.4 +2.0 compare
pH Growth at pH6 and (C) Trisodium citrate +0.4 +1.9 compare
nitrogen source Urea (N) +0.4 +1.7 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +1.7 compare
temperature Growth at 30C; with MOPS +0.5 +2.7 compare
stress Growth with Chloride 500 mM; with MOPS +0.5 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +2.4 compare