Fitness data for PP_4038 in Pseudomonas putida KT2440

Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data)
Original annotation: NADP-dependent dihydropyrimidine dehydrogenase subunit PreA
SEED: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source Uracil (N) -4.1 -8.4 compare
nitrogen source Uracil (N) -3.0 -8.8 compare
nitrogen source 3-aminobutyric (N) -2.3 -10.4 compare
nitrogen source 3-aminobutyric (N) -1.7 -9.9 compare
nitrogen source 2,6-diaminopimelic (N) -1.2 -3.8 compare
carbon source Delta-Nonalactone (C) -0.9 -3.9 compare
carbon source Trisodium citrate (C) -0.8 -2.3 compare
carbon source L-tyrosine 5 mM (C) -0.8 -2.8 compare
pH Growth at pH7 and (C) Trisodium citrate -0.8 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.8 compare
nitrogen source Ammonium chloride (N) -0.6 -3.3 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.6 -1.7 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.6 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +2.2 compare
pH Growth at pH9 and (C) Trisodium citrate +0.7 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.0 compare
carbon source 3-Hydroxydecanoic (C) +0.8 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.2 +2.3 compare