Fitness data for PP_4015 in Pseudomonas putida KT2440

HflD-like high frequency lysogenization protein
SEED: FIG002903: a protein of unknown function perhaps involved in purine metabolism
KEGG: high frequency lysogenization protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
temperature Growth at 30C; with MOPS -1.3 -2.2 compare
carbon source D-Glucose (C) -1.0 -2.8 compare
nitrogen source Ammonium chloride (N); with MOPS -1.0 -2.3 compare
temperature shift Temperature shift 30_to_4; with MOPS -1.0 -2.9 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.0 -2.4 compare
temperature shift Temperature shift 30_to_4 -1.0 -3.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 -3.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -1.9 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.9 -1.9 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.8 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.8 -1.4 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -1.6 compare
stress R2A with Fusaric 480 ug/mL -0.8 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -2.2 compare
nitrogen source Urea (N) -0.8 -2.4 compare
carbon source Nonanoic (C) -0.8 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.9 +2.0 compare
nitrogen source DL-2-Aminobutyric (N) +0.9 +6.2 compare
nitrogen source Ammonium chloride and TNT (N) +0.9 +4.6 compare