Fitness data for PP_3939 in Pseudomonas putida KT2440

porin-like protein
SEED: benzoate-specific porin

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.5 -2.1 compare
phage P. putida PUT 7 MOI 1 -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.1 compare
nitrogen source nitrate (N) -0.3 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.3 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.3 -1.5 compare
nitrogen source Ammonium chloride (N) -0.3 -1.5 compare
pH Growth at pH6 and (C) Trisodium citrate -0.3 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.3 -2.0 compare
phage P. putida Sci Big MOI 0.1 -0.3 -1.4 compare
pH Growth at pH7 and (C) Trisodium citrate -0.3 -1.3 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.3 -1.5 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.3 -1.6 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.3 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3 +1.6 compare
pH Growth at pH7 and (C) D-Glucose +0.3 +1.6 compare
nitrogen source Urea (N) +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.3 compare