Fitness data for PP_3807 in Pseudomonas putida KT2440

Thioesterase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -0.7 -2.1 compare
pH Growth at pH6 and (C) D-Glucose -0.7 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -2.0 compare
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.5 -1.8 compare
reactor_pregrowth Adaptation in M9 media timecourse 3; day 3 +0.5 +3.1 compare
reactor_pregrowth Adaptation in M9 media timecourse 1; day 3 +0.5 +2.7 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.5 +3.0 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.5 +2.6 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.6 +2.4 compare
phage P. putida South MOI 0.1 +0.6 +2.9 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +0.6 +2.9 compare
pH Growth at pH7 and (C) D-Glucose +0.6 +2.0 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +0.6 +2.9 compare
nitrogen source Urea (N) +0.6 +2.4 compare
pH Growth at pH6 and (C) D-Glucose +0.6 +1.7 compare
carbon source ferulate (C); with MOPS +0.6 +1.8 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.7 +3.2 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +1.1 +2.7 compare