Fitness data for PP_3711 in Pseudomonas putida KT2440

diguanylate cyclase
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -3.1 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.7 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.4 compare
stress R2A with Fusaric 480 ug/mL -0.5 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.3 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.5 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -1.6 compare
carbon source Quinic Acid (C) -0.4 -2.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.9 compare
stress Geraniol 1 vol% -0.4 -2.6 compare
pH Growth at pH7 and (C) D-Glucose -0.4 -1.2 compare
nitrogen source no extra (N); with MOPS +0.4 +1.6 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.4 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.4 +1.6 compare
pH pH 8 +0.4 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +1.8 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.5 +2.4 compare
carbon source Lauric (C) +0.5 +2.7 compare
carbon source L-Leucine (C) +0.6 +3.0 compare