Fitness data for PP_3650 in Pseudomonas putida KT2440

NUDIX hydrolase
SEED: FAD pyrophosphatase (EC 3.6.1.18), putative paralog

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.6 -3.5 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -1.9 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -3.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.8 compare
carbon source 3-Hydroxydecanoic (C) -0.4 -2.5 compare
carbon source D-Glucose (C); with MOPS -0.4 -1.4 compare
carbon source D-Fructose (C) -0.4 -2.2 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -1.6 compare
temperature Growth at 34C -0.4 -1.9 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.9 compare
carbon source L-Glutamic (C) +0.4 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +2.1 compare
carbon source D-Lysine 10 mM (C) +0.4 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.5 compare
carbon source 2-Methylbutanoic (C) +0.5 +3.0 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +2.1 compare
carbon source 1,3-Hexanediol (C) +0.6 +2.9 compare