Fitness data for PP_3630 in Pseudomonas putida KT2440

tyrosine-specific outer membrane porin D
SEED: Outer membrane porin, OprD family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.8 -3.4 compare
phage P. putida Sci small MOI 0.1 -0.6 -2.3 compare
micoeukaryotes C.elegans, mixed culture-2 -0.4 -2.9 compare
nitrogen source NAG (N); with MOPS -0.4 -2.1 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.4 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -1.8 compare
phage P. putida PUT 7 MOI 1 -0.4 -2.0 compare
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.4 -2.4 compare
carbon source acetate (C) -0.4 -1.8 compare
carbon source carbon source D-Glucose 55.5 mM -0.3 -1.9 compare
micoeukaryotes C.elegans, mixed culture-1 -0.3 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -2.0 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.3 -2.3 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.3 -1.8 compare
carbon source D-Glucose (C) +0.3 +1.6 compare
carbon source 5-Aminovaleric 10 mM (C) +0.3 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.0 compare
no stress control Growth with no stress +0.4 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +2.5 compare