Fitness data for PP_3628 in Pseudomonas putida KT2440

Choline/carnitine/betaine transporter family protein
SEED: Glycine betaine transporter OpuD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.5 -1.9 compare
phage P. putida Sci Big MOI 0.1 -0.4 -1.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.4 -2.2 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -1.7 compare
phage P. putida South MOI 10 -0.3 -1.8 compare
phage P. putida Missley MOI 0.1 -0.3 -1.6 compare
carbon source butyrate (C) -0.3 -2.0 compare
phage P. put PUT 10 MOI 10 -0.3 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -1.7 compare
nitrogen source nitrogen source nitrite 1mM -0.3 -1.6 compare
phage PUT8 MOI 0.1 -0.3 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.8 compare
carbon source ferulate (C); with MOPS +0.3 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.3 compare
nitrogen source Hippuric (N) +0.3 +2.2 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.3 +1.8 compare
carbon source D-Glucose (C) +0.5 +2.2 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +2.3 compare