Fitness data for PP_3601 in Pseudomonas putida KT2440

galactarate dehydratase
SEED: D-galactarate dehydratase (EC 4.2.1.42)
KEGG: galactarate dehydratase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source D-Galacturonic Acid (C) -6.2 -4.3 compare
carbon source D-Galacturonic Acid (C) -5.9 -5.7 compare
carbon source Mucic (C) -5.1 -8.5 compare
carbon source Mucic (C) -4.9 -8.1 compare
carbon source Rhamnogalacturonan - from potato (C) -2.0 -6.8 compare
carbon source Rhamnogalacturonan - from potato (C) -1.8 -7.6 compare
carbon source D-Glucuronic gamma lactone (C) -0.9 -4.8 compare
carbon source D-Glucuronic gamma lactone (C) -0.8 -4.0 compare
carbon source D-Glucaric (C) -0.7 -3.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -3.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.6 compare
pH Growth at pH9 and (C) Trisodium citrate -0.6 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -2.2 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.4 compare
nitrogen source NAG (N); with MOPS -0.5 -1.4 compare
pH pH 7 -0.5 -1.9 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.3 compare
nitrogen source NAG (N); with MOPS +0.5 +2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.4 compare