Fitness data for PP_3575 in Pseudomonas putida KT2440

Outer membrane ferric siderophore receptor
SEED: TonB-dependent ferric achromobactin receptor protein
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -1.7 compare
carbon source L-Proline (C) -0.2 -1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.2 -1.2 compare
carbon source benzoic (C) -0.2 -1.6 compare
pH Valerolactone (C) pH 6.5 +0.2 +1.4 compare
pH Growth at pH6 and (C) D-Glucose +0.2 +1.2 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 +1.2 compare
nitrogen source Ammonium chloride (N) +0.2 +1.5 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +0.2 +1.6 compare
temperature Growth at 25C +0.2 +1.2 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.2 +1.2 compare
carbon source Tween 20 (C) +0.2 +1.4 compare
pH pH 4 +0.2 +1.5 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.2 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +2.0 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +2.4 compare
phage P. putida Sci small MOI 0.1 +0.6 +3.4 compare