Fitness data for PP_3569 in Pseudomonas putida KT2440

quinate dehydrogenase (quinone)
SEED: Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.99.25)
KEGG: quinate dehydrogenase (quinone)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
nitrogen source nitrogen source nitrate 5mM -0.5 -2.4 compare
temperature shift Temperature shift 30_to_25 -0.5 -2.6 compare
carbon source Quinic Acid (C) -0.4 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.1 compare
carbon source ferulate (C); with MOPS -0.4 -1.7 compare
carbon source Quinic Acid (C) -0.4 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4 -2.4 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.4 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.5 compare
stress NaCl stress 250 mM -0.4 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4 -2.1 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.4 -1.9 compare
carbon source Hexanoic (C) -0.3 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.3 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.3 -1.6 compare
pH pH 6 +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.2 compare
carbon source Crotonic (C) +0.4 +1.5 compare
pH pH 7 +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.7 compare