Fitness data for PP_3567 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.8 -3.4 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -2.6 compare
carbon source ferulate (C); with MOPS -0.6 -2.0 compare
carbon source acetate (C) -0.6 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -2.1 compare
carbon source Valerolactone (C) -0.5 -2.2 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.5 -2.2 compare
temperature shift Temperature shift 30_to_25 -0.5 -2.3 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -1.7 compare
nitrogen source nitrate (N) -0.5 -1.4 compare
phage P. putida South MOI 10 -0.5 -1.8 compare
stress Growth with Chloride 500 mM; with MOPS -0.5 -1.7 compare
nitrogen source no extra (N); with MOPS -0.4 -1.6 compare
nitrogen source Ammonium chloride (N); with MOPS -0.4 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.6 compare
phage P. putida Missley MOI 0.1 +0.5 +2.0 compare
carbon source Myristic (C) +0.5 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.5 compare