Fitness data for PP_3559 in Pseudomonas putida KT2440

glycine betaine ABC transporter (permease)
SEED: L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)
KEGG: glycine betaine/proline transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
stress R2A with Fusaric 240 ug/mL -1.7 -2.6 compare
carbon source D-Glucose (C) -1.5 -1.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.4 -1.2 compare
nitrogen source nitrogen source nitrate 5mM -1.3 -2.7 compare
nitrogen source nitrate (N) -1.2 -2.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.1 -2.6 compare
carbon source Myristic (C) -1.1 -2.3 compare
carbon source D-Lysine 10 mM (C) -1.1 -3.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 -2.2 compare
toxin pUC18_phdP1_pSU18T_docP1 -1.1 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -1.9 compare
nitrogen source NAG (N); with MOPS +0.9 +1.7 compare
nitrogen source NAG (N) +0.9 +2.4 compare
temperature shift Temperature shift 30_to_25 +0.9 +2.4 compare
pH pH 9 +1.0 +2.5 compare
phage P. putida Missley MOI 0.1 +1.0 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 +2.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +1.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +2.5 +1.7 compare