Fitness data for PP_3547 in Pseudomonas putida KT2440

putative NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain
SEED: Oxidoreductase, short chain dehydrogenase/reductase family (EC 1.1.1.100)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.9 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.5 -2.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -1.7 compare
nitrogen source nitrogen source nitrite 1mM -0.5 -1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 -1.8 compare
pH Growth at pH6 and (C) Trisodium citrate -0.4 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.8 compare
phage P. putida South MOI 10 -0.4 -2.1 compare
temperature shift Temperature shift 30_to_25 +0.4 +2.2 compare
carbon source Trisodium citrate (C) +0.4 +1.8 compare
phage P. putida Missley MOI 0.1 +0.4 +1.4 compare
temperature shift Temperature shift 30_to_10 +0.4 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +2.0 compare
phage P. putida Sci Big MOI 0.1 +0.5 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5 +2.6 compare
temperature shift Temperature shift 30_to_25 +0.5 +2.1 compare
carbon source D-Glucose (C) +0.5 +2.3 compare
pH Growth at pH7 and (C) D-Glucose +0.5 +1.7 compare