Fitness data for PP_3448 in Pseudomonas putida KT2440

bacteriophage N4 receptor, inner membrane subunit
KEGG: bacteriophage N4 adsorption protein B

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -0.7 -2.4 compare
pH Growth at pH7 and (C) Trisodium citrate -0.6 -1.8 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.5 -2.6 compare
stress R2A with Fusaric 240 ug/mL -0.5 -2.1 compare
phage PUT8 MOI 0.1 -0.5 -2.5 compare
nitrogen source NAG (N); with MOPS -0.5 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.8 compare
carbon source D-Glucose (C) -0.4 -1.8 compare
phage P. putida PUT 7 MOI 1 -0.4 -1.8 compare
nitrogen source NAG (N); with MOPS -0.4 -1.5 compare
temperature Growth at 10C; with MOPS -0.4 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -1.8 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.4 -2.0 compare
carbon source Delta-Decalactone (C) +0.4 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.5 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +2.0 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.5 +1.9 compare