Fitness data for PP_3355 in Pseudomonas putida KT2440

Beta-ketothiolase
SEED: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.3 -4.0 compare
carbon source ferulate (C); with MOPS -1.1 -3.9 compare
pH Growth at pH6 and (C) D-Glucose -0.9 -2.2 compare
nitrogen source NAG (N); with MOPS -0.8 -2.0 compare
nitrogen source Urea (N); with MOPS -0.7 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -2.5 compare
stress Growth with Chloride 500 mM -0.5 -2.4 compare
carbon source 1,3-Butandiol (C) -0.5 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.9 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.5 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -2.2 compare
carbon source DL-2-Aminoadipic 10 mM (C) -0.4 -2.2 compare
nitrogen source Ammonium chloride (N) +0.4 +2.8 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.5 +2.6 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +2.0 compare
carbon source L-Leucine (C) +0.6 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.9 compare