Fitness data for PP_3348 in Pseudomonas putida KT2440

GGDEF domain protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
temperature shift Temperature shift 30_to_34; with MOPS -1.1 -4.2 compare
phage P. putida Sci Big MOI 0.1 -0.9 -2.1 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -1.9 compare
stress R2A with Fusaric 240 ug/mL -0.7 -3.0 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.6 -2.5 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.6 -2.6 compare
carbon source carbon source D-Glucose 55.5 mM -0.6 -1.7 compare
carbon source D-Glucuronic gamma lactone (C) -0.6 -2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.6 -2.4 compare
carbon source carbon source Bisabolol 45 mM -0.6 -2.7 compare
phage P. putida PUT 7 MOI 1 -0.6 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.5 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.6 -1.6 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.6 -2.3 compare
carbon source Valerolactone (C) -0.5 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.2 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.5 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +1.3 compare
nitrogen source NAG (N); with MOPS +0.7 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.4 compare