Fitness data for PP_3281 in Pseudomonas putida KT2440

hydroxyphenylacetyl-CoA thioesterase
SEED: Phenylacetic acid degradation protein PaaD, thioesterase
KEGG: phenylacetic acid degradation protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source Phenylacetic (C) -3.2 -5.5 compare
carbon source Phenylacetic (C) -2.5 -8.0 compare
phage P. putida PUT 7 MOI 1 -0.9 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -3.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.0 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.7 -1.5 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.6 -1.9 compare
nitrogen source Urea (N) -0.6 -2.4 compare
stress Growth with Chloride 200 mM; with MOPS -0.6 -2.1 compare
stress R2A with Fusaric 240 ug/mL -0.6 -1.5 compare
pH Growth at pH8 and (C) Trisodium citrate -0.6 -2.3 compare
carbon source D-Lysine 10 mM (C) -0.6 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -1.4 compare
stress Geraniol 1 vol% -0.6 -2.9 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.6 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +0.8 compare
phage P. putida Sci small MOI 0.1 +0.6 +1.5 compare