Fitness data for PP_3260 in Pseudomonas putida KT2440

DNA ligase D
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.5 -1.8 compare
temperature Growth at 25C -0.5 -2.8 compare
phage P. putida PUT 7 MOI 1 -0.4 -1.6 compare
phage P. putida Sci small MOI 0.1 -0.4 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -1.9 compare
stress Growth with Chloride 200 mM; with MOPS -0.3 -2.1 compare
nitrogen source Urea (N) -0.3 -1.9 compare
stress Growth with Chloride 500 mM; with MOPS -0.3 -2.1 compare
phage P. putida Missley MOI 0.1 -0.3 -1.5 compare
carbon source D-Glucose (C) -0.3 -1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.7 compare
carbon source Trisodium citrate (C) -0.3 -1.6 compare
phage P. putida compost MOI 0.1 -0.3 -2.3 compare
temperature Growth at 30C; with MOPS -0.3 -1.7 compare
carbon source D-Lysine 10 mM (C) -0.3 -1.8 compare
nitrogen source NAG (N); with MOPS -0.3 -1.4 compare
nitrogen source TNT (N) +0.3 +2.1 compare
pH Growth at pH6 and (C) Trisodium citrate +0.3 +1.9 compare
pH pH 9 +0.3 +1.6 compare
nitrogen source Ammonium chloride (N) +0.4 +2.5 compare