Fitness data for PP_3233 in Pseudomonas putida KT2440

transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family
SEED: transcriptional regulator, Crp/Fnr family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -1.6 -2.4 compare
temperature shift Temperature shift 10_to_25; with MOPS -1.6 -1.6 compare
carbon source ferulate (C); with MOPS -1.4 -2.7 compare
pH Growth at pH8 and (C) Trisodium citrate -1.4 -2.7 compare
nitrogen source no extra (N) -1.3 -2.7 compare
pH Growth at pH6 and (C) Trisodium citrate -1.1 -2.2 compare
nitrogen source NAG (N); with MOPS -1.1 -1.0 compare
stress Growth with Chloride 200 mM -1.1 -2.0 compare
nitrogen source 2,6-diaminopimelic (N) -1.0 -2.0 compare
carbon source L-Leucine (C) -1.0 -2.3 compare
temperature shift Temperature shift 10_to_30 -1.0 -2.1 compare
pH Growth at pH9 and (C) Trisodium citrate -1.0 -1.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.9 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -0.9 -2.7 compare
phage PUT 8 MOI 1 -0.9 -0.9 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.9 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.1 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 +3.6 compare