Fitness data for PP_3177 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Sugar diacid utilization regulator SdaR
KEGG: carbohydrate diacid regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -1.7 -3.3 compare
phage P. putida Sci small MOI 0.1 -1.6 -2.2 compare
temperature Growth at 25C; with MOPS -0.9 -2.6 compare
nitrogen source D-2-Aminobutyric (N) -0.8 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.8 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys -0.6 -2.2 compare
nitrogen source NAG (N); with MOPS -0.5 -1.6 compare
carbon source Sorghum Hydrolysate (C) -0.5 -2.5 compare
nitrogen source Propiolactam (N) -0.5 -2.3 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.5 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.5 -1.3 compare
temperature shift Temperature shift 10_to_25 +0.5 +2.2 compare
nitrogen source nitrogen source nitrate 20mM +0.5 +1.8 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.5 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +1.6 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.5 +1.9 compare
no stress control Growth with no stress +0.5 +1.8 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.4 compare