Fitness data for PP_3155 in Pseudomonas putida KT2440

putative Outer membrane ferric siderophore receptor
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.5 -2.5 compare
carbon source 4-Aminobutyric 10 mM (C) -0.4 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.5 compare
carbon source Decanoic (C) -0.4 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -1.9 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.3 -2.2 compare
nitrogen source no extra (N); with MOPS -0.3 -1.8 compare
pH Growth at pH6 and (C) D-Glucose -0.3 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.6 compare
nitrogen source D-2-Aminobutyric (N) -0.3 -1.5 compare
carbon source Delta-Nonalactone (C) -0.3 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.2 -1.8 compare
nitrogen source nitrate (N) -0.2 -1.6 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.2 +1.7 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.3 +1.2 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.3 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 +1.7 compare
temperature Growth at 25C; with MOPS +0.3 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.7 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.3 +2.3 compare