Fitness data for PP_3134 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Glycerate kinase (EC 2.7.1.31)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.1 -3.0 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.8 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.9 compare
carbon source L-Lysine 10 mM (C) -0.7 -3.8 compare
pH Valerolactone (C) pH 6.5 -0.7 -2.1 compare
nitrogen source Propandiamine (N) -0.6 -2.2 compare
pH Growth at pH6 and (C) D-Glucose -0.6 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.1 compare
nitrogen source NAG (N); with MOPS -0.5 -1.3 compare
phage P. putida PUT 7 MOI 1 +0.5 +1.5 compare
phage P. putida Sci Big MOI 0.1 +0.5 +1.7 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.9 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.3 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.6 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 +3.5 compare
phage P. putida Missley MOI 0.1 +0.7 +2.0 compare