Fitness data for PP_3076 in Pseudomonas putida KT2440

putative ABC transporter permease protein
SEED: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
KEGG: microcin C transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source DL-3-Hydroxybutyric (C) -1.2 -5.8 compare
carbon source DL-3-Hydroxybutyric (C) -1.1 -6.1 compare
carbon source 1,4-Butanediol (C) -0.8 -5.5 compare
carbon source 1,4-Butanediol (C) -0.8 -5.2 compare
pH Growth at pH7 and (C) Trisodium citrate -0.6 -2.4 compare
pH Growth at pH9 and (C) Trisodium citrate -0.6 -2.3 compare
carbon source 1,3-Butandiol (C) -0.6 -2.5 compare
pH pH 4 -0.5 -2.6 compare
nitrogen source 2,6-diaminopimelic (N) -0.5 -2.1 compare
pH pH 5 -0.5 -2.3 compare
nitrogen source nitrogen source nitrite 0.5mM -0.5 -2.3 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. -0.5 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -2.1 compare
carbon source carbon source Bisabolene 48.9 mM -0.4 -2.2 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.4 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.2 compare
carbon source Nonanoic (C) -0.4 -2.0 compare
carbon source rac-3-Hydroxypentanoic Acid (C) -0.4 -2.8 compare
carbon source L-Leucine (C) +0.5 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +2.1 compare