Fitness data for PP_3062 in Pseudomonas putida KT2440

putative Pyocin R2_PP, tail length determination protein
SEED: Phage tail length tape-measure protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage PUT 8 MOI 1 -0.4 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -2.2 compare
carbon source ferulate (C); with MOPS -0.4 -1.6 compare
pH pH 4 -0.3 -1.8 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.3 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.7 compare
temperature shift Temperature shift 30_to_25 +0.3 +1.7 compare
nitrogen source nitrogen source Ammonium chloride 20mM +0.3 +1.8 compare
pH Growth at pH6 and (C) D-Glucose +0.4 +1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.4 +1.7 compare
nitrogen source nitrogen source nitrite 0.5mM +0.4 +1.8 compare
nitrogen source nitrogen source nitrite 1mM +0.4 +1.7 compare
nitrogen source NAG (N); with MOPS +0.4 +1.7 compare
pH Growth at pH9 and (C) Trisodium citrate +0.4 +2.1 compare
temperature Growth at 25C +0.4 +2.0 compare
carbon source Myristic (C) +0.5 +1.6 compare
nitrogen source nitrogen source nitrite 0.5mM +0.5 +2.3 compare
carbon source acetate (C) +0.5 +2.3 compare
nitrogen source Ammonium chloride (N) +0.6 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.8 compare