Fitness data for PP_3058 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: elements of external origin; phage-related functions and prophages

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
temperature shift Temperature shift 10_to_30 -1.1 -3.0 compare
phage P. putida PUT 7 MOI 1 -1.1 -1.8 compare
phage P. putida Sci small MOI 0.1 -1.0 -1.5 compare
pH Growth at pH9 and (C) Trisodium citrate -1.0 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.0 -2.3 compare
pH Growth at pH7 and (C) D-Glucose -0.9 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -2.7 compare
nitrogen source D-2-Aminobutyric (N) -0.8 -1.6 compare
nitrogen source Propandiamine (N) -0.8 -2.1 compare
nitrogen source nitrogen source nitrate 20mM -0.8 -2.3 compare
phage P. putida Sci Big MOI 0.1 -0.8 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -2.2 compare
stress Growth with Chloride 200 mM; with MOPS -0.8 -2.0 compare
pH Growth at pH7 and (C) Trisodium citrate -0.7 -1.1 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.8 +2.2 compare
pH D-Glucose (C) pH 6 +0.8 +3.2 compare
nitrogen source TNT (N) +0.8 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +2.9 compare
carbon source Valerolactone (C) +1.0 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +1.9 compare