Fitness data for PP_3042 in Pseudomonas putida KT2440

putative Terminase, large subunit
SEED: Phage terminase, large subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.8 -3.0 compare
phage P. putida PUT 7 MOI 1 -0.6 -2.9 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -2.0 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.4 -2.5 compare
nitrogen source 2,6-diaminopimelic (N) -0.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.3 -1.7 compare
nitrogen source nitrogen source nitrite 0.5mM -0.3 -1.9 compare
temperature Growth at 25C; with MOPS -0.3 -2.0 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.3 +2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.3 +2.1 compare
carbon source Trisodium citrate (C) +0.3 +1.7 compare
nitrogen source D-2-Aminobutyric (N) +0.3 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.8 compare
carbon source ferulate (C); with MOPS +0.3 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 +2.1 compare
nitrogen source NAG (N); with MOPS +0.4 +2.0 compare
carbon source Nonanoic (C) +0.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.4 compare