Fitness data for PP_3038 in Pseudomonas putida KT2440

Pyocin R2_PP, traC domain protein
SEED: DNA primase, phage associated
KEGG: putative DNA primase/helicase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source carbon source D-Glucose 55.5 mM -0.7 -3.9 compare
phage P. putida Sci Big MOI 0.1 -0.7 -2.8 compare
phage P. putida PUT 7 MOI 1 -0.6 -2.8 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.5 -2.9 compare
pH pH 4 -0.4 -2.1 compare
carbon source ferulate (C); with MOPS -0.4 -1.8 compare
temperature Growth at 30C; with MOPS -0.4 -1.8 compare
temperature shift Temperature shift 10_to_34; with MOPS -0.3 -2.4 compare
stress Growth with Chloride 500 mM; with MOPS -0.3 -1.8 compare
nitrogen source nitrogen source nitrate 5mM -0.3 -1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.3 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.3 compare
carbon source Nonanoic (C) +0.3 +1.8 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 +1.9 compare
stress R2A with Fusaric 240 ug/mL +0.3 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.2 compare