Fitness data for PP_3003 in Pseudomonas putida KT2440

3-dehydroquinate dehydratase 3, type II
SEED: 3-dehydroquinate dehydratase II (EC 4.2.1.10)
KEGG: 3-dehydroquinate dehydratase II

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


Add gene:

Or see all 989 experiments or choose conditions

group condition fitness t score  
phage P. putida Sci small MOI 0.1 -1.6 -1.7 compare
nitrogen source D-2-Aminobutyric (N) -1.6 -2.8 compare
nitrogen source no extra (N); with MOPS -1.5 -2.5 compare
pH Valerolactone (C) pH 6.5 -1.2 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -1.0 compare
carbon source pyruvate (C) -1.0 -2.7 compare
no stress control Growth with no stress -0.9 -1.7 compare
nitrogen source Ammonium chloride (N) -0.9 -1.0 compare
carbon source D-Glucose (C) -0.9 -1.2 compare
stress Growth with Chloride 200 mM; with MOPS -0.8 -1.9 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM -0.8 -2.7 compare
temperature shift Temperature shift 10_to_30 -0.8 -1.8 compare
temperature shift Temperature shift 30_to_25 -0.8 -2.4 compare
carbon source ferulate (C); with MOPS -0.8 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.8 +1.6 compare
nitrogen source nitrogen source Ammonium chloride 20mM +0.8 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +3.0 compare
nitrogen source nitrogen source nitrate 20mM +1.0 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.4 compare
nitrogen source nitrogen source nitrate 5mM +1.1 +2.0 compare