Fitness data for PP_3002 in Pseudomonas putida KT2440

shikimate dehydrogenase-related enzyme
SEED: Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
KEGG: shikimate dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
nitrogen source Urea (N) -1.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -1.6 compare
carbon source carbon source 4-vinylphenol 0.1 mM -1.4 -2.3 compare
nitrogen source nitrogen source nitrite 0.5mM -1.4 -2.2 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -1.3 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -2.4 compare
carbon source Valerolactone (C) -1.1 -1.8 compare
carbon source Acetate Carbon Source (5mM) -1.1 -2.9 compare
nitrogen source Urea (N) -1.1 -1.2 compare
temperature Growth at 30C; with MOPS -1.1 -1.4 compare
nitrogen source no extra (N) -1.1 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.1 -1.6 compare
carbon source Glutaric (C) -1.0 -2.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -1.0 -2.2 compare
phage PUT 8 MOI 1 +1.1 +3.1 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.1 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.2 +1.1 compare
phage P. putida South MOI 10 +1.2 +4.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +2.1 +1.8 compare