Fitness data for PP_2975 in Pseudomonas putida KT2440

Insertion element ISR1 uncharacterized 10 kDa protein A3
SEED: Mobile element protein
KEGG: putative transposase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
temperature shift Temperature shift 30_to_21; with MOPS -1.1 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -3.2 compare
stress Growth with Chloride 500 mM -0.6 -2.2 compare
nitrogen source Urea (N) -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6 -1.5 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.5 -2.3 compare
stress Butanol 0.6 vol% -0.5 -2.7 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.5 -1.4 compare
carbon source M9 minimal media_noCarbon with D-Glucose 10 mM; 30C; then outgrowth in LB -0.5 -2.5 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5 +1.2 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +1.7 compare
carbon source ferulate (C); with MOPS +0.5 +1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 +1.7 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.5 +1.7 compare
pH pH 7 +0.5 +1.2 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +1.4 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.5 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.2 compare