Fitness data for PP_2908 in Pseudomonas putida KT2440

DNA-binding transcriptional repressor
SEED: CsiR, transcriptional repressor of CsiD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
nitrogen source Propandiamine (N) -4.4 -3.0 compare
nitrogen source Propandiamine (N) -4.0 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.9 -2.9 compare
nitrogen source Beta-alanine (N) -1.8 -6.7 compare
stress 3-methyl-1-butanol 0.4 vol% -1.6 -4.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.6 -1.9 compare
nitrogen source Beta-alanine (N) -1.5 -4.2 compare
carbon source acetate (C) -1.4 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.4 -2.9 compare
temperature shift Temperature shift 30_to_4; with MOPS -1.4 -3.6 compare
pH Growth at pH6 and (C) D-Glucose -1.4 -2.3 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -1.4 -2.0 compare
pH D-Glucose (C) pH 6.5 -1.2 -3.0 compare
pH Growth at pH9 and (C) Trisodium citrate -1.2 -1.8 compare
stress Growth with Chloride 500 mM -1.2 -4.9 compare
pH D-Glucose (C) pH 6 -1.2 -2.4 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -1.2 -2.8 compare
nitrogen source 2,6-diaminopimelic (N) +1.3 +3.1 compare
carbon source 4-Aminobutyric 10 mM (C) +1.9 +5.3 compare
carbon source L-Alanine (C) +4.1 +18.1 compare