Fitness data for PP_2858 in Pseudomonas putida KT2440

conserved exported protein of unknown function
SEED: Fap unknown function protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.1 -1.8 compare
phage P. putida Sci small MOI 0.1 -2.0 -1.4 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -1.4 compare
pH Growth at pH6 and (C) Trisodium citrate -1.0 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -1.8 compare
nitrogen source Ammonium chloride (N) -1.0 -1.0 compare
nitrogen source 2,6-diaminopimelic (N) +1.0 +2.7 compare
carbon source L-Leucine (C) +1.0 +2.6 compare
reactor_pregrowth Adaptation in M9 media timecourse 4; day 3 +1.0 +1.8 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM +1.0 +2.4 compare
stress Cholinium aspartate 10 vol% +1.1 +3.1 compare
carbon source L-Lysine 10 mM (C) +1.1 +3.3 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +1.1 +1.8 compare
nitrogen source NAG (N) +1.1 +5.3 compare
temperature shift Temperature shift 10_to_25; with MOPS +1.1 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.3 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +1.1 +2.8 compare
pH pH 7 +1.8 +3.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.8 +2.3 compare