Fitness data for PP_2856 in Pseudomonas putida KT2440

conserved exported protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.8 compare
phage P. putida Missley MOI 0.1 -0.5 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.4 compare
nitrogen source TNT (N) +0.5 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.9 compare
carbon source Trisodium citrate (C) +0.5 +2.5 compare
pH Valerolactone (C) pH 6.5 +0.5 +2.8 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.7 compare
carbon source L-Leucine (C) +0.5 +3.0 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.5 +2.5 compare
carbon source Succinic Acid (C) +0.6 +3.3 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.6 +2.8 compare
pH Growth at pH9 and (C) Trisodium citrate +0.7 +2.9 compare
carbon source Succinic Acid (C) +0.7 +4.7 compare
carbon source L-Lysine 10 mM (C) +0.8 +4.6 compare
carbon source L-Leucine (C) +1.1 +7.2 compare
carbon source L-Leucine (C) +1.2 +7.2 compare