Fitness data for PP_2838 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Hypothetical protein, restriction endonuclease-like VRR-NUC domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -1.4 -4.3 compare
phage P. putida Sci small MOI 0.1 -0.7 -1.1 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -2.4 compare
stress R2A with Fusaric 240 ug/mL -0.6 -1.9 compare
phage PUT 8 MOI 1 -0.6 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.1 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -1.4 compare
carbon source Valerolactone (C) -0.6 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.5 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.5 -2.6 compare
nitrogen source nitrogen source nitrate 20mM -0.5 -2.7 compare
no stress control Growth with no stress -0.5 -2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.5 -1.8 compare
carbon source 1,3-Butandiol (C) -0.5 -1.6 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.8 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +1.8 compare