Fitness data for PP_2732 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: FIG004436: Protein related to deoxyribodipyrimidine photolyase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -2.3 compare
phage P. putida Missley MOI 0.1 -0.9 -1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.7 -1.7 compare
carbon source Valeric (C) -0.7 -2.3 compare
carbon source Myristic (C) -0.6 -2.0 compare
nitrogen source NAG (N); with MOPS -0.6 -1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -1.5 compare
phage P. putida PUT 7 MOI 1 -0.5 -1.5 compare
carbon source Vanillin (C) -0.5 -2.5 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.5 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.8 compare
nitrogen source Hydantoin (N) +0.5 +2.9 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +1.9 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.5 +2.7 compare
carbon source Valerolactone (C) +0.5 +2.7 compare
temperature shift Temperature shift 10_to_30 +0.5 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.2 compare
temperature Growth at 25C +0.6 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +2.5 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.7 +2.5 compare