Fitness data for PP_2608 in Pseudomonas putida KT2440

Shikimate dehydrogenase family protein
SEED: Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
KEGG: shikimate dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.8 -1.5 compare
phage P. put South MOI 10 -0.7 -2.2 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.7 -2.6 compare
carbon source ferulate (C); with MOPS -0.7 -1.9 compare
carbon source acetate (C) -0.7 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.7 compare
temperature shift Temperature shift 30_to_25 -0.6 -2.9 compare
nitrogen source no extra (N); with MOPS -0.6 -2.6 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6 -2.2 compare
carbon source butyrate (C) -0.5 -2.3 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.0 compare
nitrogen source nitrite (N) -0.5 -2.2 compare
carbon source Crotonic (C) -0.5 -1.9 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.5 -2.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.5 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.6 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +2.1 compare